No. words: 974; after pruning: 948


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   63   -3.5 -3.5 (1,1:326)  149 10.36 0.00 0.00  BE518003Sn31P101C08P067G101F1_079.ab1       43   264 (172)  C BE518003Sn31P101C08P067G101R1_079.ab1   (253)   285    64 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.4 (<20 part: -4.4 (#=23), >20:0.0 (#=0); in HQ: -4.4, out HQ 0.0), match: 4.4  trail: -1.7  lead: -1.9  total: -3.6  149 10.36 0.00 0.00  BE518003Sn31P101C08P067G101F1_079.ab1       43   264 (172)  C BE518003Sn31P101C08P067G101R1_079.ab1   (253)   285    64 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.5       1        0

Gap   # merges  # failures
 size
63       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1  C BE518003Sn31P101C08P067G101R1_079.ab1   538 
  270    BE518003Sn31P101C08P067G101F1_079.ab1    59 
  278  C BE518003Sn31P101C08P067G101R1_079.ab1   261 
  300    BE518003Sn31P101C08P067G101F1_079.ab1    89 
  308  C BE518003Sn31P101C08P067G101R1_079.ab1   231 
  312    BE518003Sn31P101C08P067G101F1_079.ab1   101 
  316  C BE518003Sn31P101C08P067G101R1_079.ab1   223 
  383    BE518003Sn31P101C08P067G101F1_079.ab1   172 
  404  C BE518003Sn31P101C08P067G101R1_079.ab1   135 
  421    BE518003Sn31P101C08P067G101F1_079.ab1   210 
Contig length: old 647, new 647

Contig length: old 647, new 647
New start: 0 
S Change at: 417; seg lengths: entry 1, contig 1
S Change at: 450; seg lengths: entry 1, contig 1