No. words: 1335; after pruning: 1309


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:636)  542  3.77 0.31 0.16  BE518003Ta11P101C08P067G101F1_069.ab1        1   637 (12)  C BE518003Ta11P101C08P067G101R1_069.ab1   (48)   638     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C BE518003Ta11P101C08P067G101R1_069.ab1   686 
   95    BE518003Ta11P101C08P067G101F1_069.ab1    45 
  111  C BE518003Ta11P101C08P067G101R1_069.ab1   576 
  115    BE518003Ta11P101C08P067G101F1_069.ab1    65 
  123  C BE518003Ta11P101C08P067G101R1_069.ab1   564 
  127    BE518003Ta11P101C08P067G101F1_069.ab1    77 
  135  C BE518003Ta11P101C08P067G101R1_069.ab1   552 
  143    BE518003Ta11P101C08P067G101F1_069.ab1    93 
  151  C BE518003Ta11P101C08P067G101R1_069.ab1   536 
  167    BE518003Ta11P101C08P067G101F1_069.ab1   117 
  171  C BE518003Ta11P101C08P067G101R1_069.ab1   516 
  183    BE518003Ta11P101C08P067G101F1_069.ab1   133 
  187  C BE518003Ta11P101C08P067G101R1_069.ab1   500 
  191    BE518003Ta11P101C08P067G101F1_069.ab1   141 
  200  C BE518003Ta11P101C08P067G101R1_069.ab1   487 
  204    BE518003Ta11P101C08P067G101F1_069.ab1   154 
  208  C BE518003Ta11P101C08P067G101R1_069.ab1   479 
  212    BE518003Ta11P101C08P067G101F1_069.ab1   162 
  216  C BE518003Ta11P101C08P067G101R1_069.ab1   471 
  248    BE518003Ta11P101C08P067G101F1_069.ab1   198 
  252  C BE518003Ta11P101C08P067G101R1_069.ab1   435 
  276    BE518003Ta11P101C08P067G101F1_069.ab1   226 
  280  C BE518003Ta11P101C08P067G101R1_069.ab1   407 
  284    BE518003Ta11P101C08P067G101F1_069.ab1   234 
  288  C BE518003Ta11P101C08P067G101R1_069.ab1   399 
  292    BE518003Ta11P101C08P067G101F1_069.ab1   242 
  296  C BE518003Ta11P101C08P067G101R1_069.ab1   391 
  328    BE518003Ta11P101C08P067G101F1_069.ab1   278 
  332  C BE518003Ta11P101C08P067G101R1_069.ab1   355 
  384    BE518003Ta11P101C08P067G101F1_069.ab1   334 
  388  C BE518003Ta11P101C08P067G101R1_069.ab1   299 
  432    BE518003Ta11P101C08P067G101F1_069.ab1   382 
  436  C BE518003Ta11P101C08P067G101R1_069.ab1   251 
  456    BE518003Ta11P101C08P067G101F1_069.ab1   406 
  460  C BE518003Ta11P101C08P067G101R1_069.ab1   227 
  476    BE518003Ta11P101C08P067G101F1_069.ab1   426 
  487  C BE518003Ta11P101C08P067G101R1_069.ab1   200 
  516    BE518003Ta11P101C08P067G101F1_069.ab1   466 
  520  C BE518003Ta11P101C08P067G101R1_069.ab1   167 
  615    BE518003Ta11P101C08P067G101F1_069.ab1   565 
  619  C BE518003Ta11P101C08P067G101R1_069.ab1    68 
  669    BE518003Ta11P101C08P067G101F1_069.ab1   619 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0 
S Change at: 224; seg lengths: entry 1, contig 1
S Change at: 483; seg lengths: entry 1, contig 1
S Change at: 681; seg lengths: entry 4, contig 4