No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.7 (1,1:639)  392  7.47 0.00 0.19  BE518003Ta16P101C08P067G101F1_066.ab1        1   522 (3)  C BE518003Ta16P101C08P067G101R1_066.ab1   (48)   639   119 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C BE518003Ta16P101C08P067G101R1_066.ab1   687 
   52    BE518003Ta16P101C08P067G101F1_066.ab1     4 
   60  C BE518003Ta16P101C08P067G101R1_066.ab1   628 
   74    BE518003Ta16P101C08P067G101F1_066.ab1    26 
   86  C BE518003Ta16P101C08P067G101R1_066.ab1   602 
   90    BE518003Ta16P101C08P067G101F1_066.ab1    42 
  114  C BE518003Ta16P101C08P067G101R1_066.ab1   574 
  118    BE518003Ta16P101C08P067G101F1_066.ab1    70 
  126  C BE518003Ta16P101C08P067G101R1_066.ab1   562 
  130    BE518003Ta16P101C08P067G101F1_066.ab1    82 
  134  C BE518003Ta16P101C08P067G101R1_066.ab1   554 
  146    BE518003Ta16P101C08P067G101F1_066.ab1    98 
  150  C BE518003Ta16P101C08P067G101R1_066.ab1   538 
  166    BE518003Ta16P101C08P067G101F1_066.ab1   118 
  174  C BE518003Ta16P101C08P067G101R1_066.ab1   514 
  182    BE518003Ta16P101C08P067G101F1_066.ab1   134 
  186  C BE518003Ta16P101C08P067G101R1_066.ab1   502 
  213    BE518003Ta16P101C08P067G101F1_066.ab1   166 
  217  C BE518003Ta16P101C08P067G101R1_066.ab1   471 
  281    BE518003Ta16P101C08P067G101F1_066.ab1   234 
  290  C BE518003Ta16P101C08P067G101R1_066.ab1   398 
  302    BE518003Ta16P101C08P067G101F1_066.ab1   255 
  306  C BE518003Ta16P101C08P067G101R1_066.ab1   382 
  329    BE518003Ta16P101C08P067G101F1_066.ab1   282 
  333  C BE518003Ta16P101C08P067G101R1_066.ab1   355 
  384    BE518003Ta16P101C08P067G101F1_066.ab1   337 
  388  C BE518003Ta16P101C08P067G101R1_066.ab1   300 
  396    BE518003Ta16P101C08P067G101F1_066.ab1   349 
  400  C BE518003Ta16P101C08P067G101R1_066.ab1   288 
  456    BE518003Ta16P101C08P067G101F1_066.ab1   409 
  460  C BE518003Ta16P101C08P067G101R1_066.ab1   228 
  476    BE518003Ta16P101C08P067G101F1_066.ab1   429 
  488  C BE518003Ta16P101C08P067G101R1_066.ab1   200 
Contig length: old 687, new 687

Contig length: old 687, new 688
New start: 0 
I Change at: 196; seg lengths: entry 3, contig 2
S Change at: 252; seg lengths: entry 1, contig 1
S Change at: 274; seg lengths: entry 1, contig 1
S Change at: 440; seg lengths: entry 1, contig 1
S Change at: 528; seg lengths: entry 3, contig 3
S Change at: 544; seg lengths: entry 1, contig 1