No. words: 924; after pruning: 898


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.2 -0.2 (1,1:617)  141 13.08 0.00 0.00  BE518003Ta17P101C08P067G101F1_095.ab1        1   237 (0)  C BE518003Ta17P101C08P067G101R1_095.ab1   (69)   618   382 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1  C BE518003Ta17P101C08P067G101R1_095.ab1   687 
   73    BE518003Ta17P101C08P067G101F1_095.ab1     4 
   85  C BE518003Ta17P101C08P067G101R1_095.ab1   603 
   89    BE518003Ta17P101C08P067G101F1_095.ab1    20 
  118  C BE518003Ta17P101C08P067G101R1_095.ab1   570 
  126    BE518003Ta17P101C08P067G101F1_095.ab1    57 
  134  C BE518003Ta17P101C08P067G101R1_095.ab1   554 
  138    BE518003Ta17P101C08P067G101F1_095.ab1    69 
  150  C BE518003Ta17P101C08P067G101R1_095.ab1   538 
  177    BE518003Ta17P101C08P067G101F1_095.ab1   108 
  181  C BE518003Ta17P101C08P067G101R1_095.ab1   507 
  282    BE518003Ta17P101C08P067G101F1_095.ab1   213 
  286  C BE518003Ta17P101C08P067G101R1_095.ab1   402 
  290    BE518003Ta17P101C08P067G101F1_095.ab1   221 
  294  C BE518003Ta17P101C08P067G101R1_095.ab1   394 
Contig length: old 687, new 687

Contig length: old 687, new 687
New start: 0 
S Change at: 168; seg lengths: entry 1, contig 1
S Change at: 204; seg lengths: entry 1, contig 1
S Change at: 211; seg lengths: entry 5, contig 5
S Change at: 223; seg lengths: entry 1, contig 1
S Change at: 249; seg lengths: entry 1, contig 1
S Change at: 271; seg lengths: entry 4, contig 4
S Change at: 278; seg lengths: entry 1, contig 1