No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.6 -1.6 (1,1:628)  307 13.22 0.56 0.00  BE518003Ta19P101C08P067G101F1_093.ab1        1   537 (0)  C BE518003Ta19P101C08P067G101R1_093.ab1   (44)   631    92 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.6       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C BE518003Ta19P101C08P067G101R1_093.ab1   675 
   48    BE518003Ta19P101C08P067G101F1_093.ab1     4 
   86  C BE518003Ta19P101C08P067G101R1_093.ab1   589 
   90    BE518003Ta19P101C08P067G101F1_093.ab1    46 
  136  C BE518003Ta19P101C08P067G101R1_093.ab1   539 
  140    BE518003Ta19P101C08P067G101F1_093.ab1    96 
  153  C BE518003Ta19P101C08P067G101R1_093.ab1   522 
  165    BE518003Ta19P101C08P067G101F1_093.ab1   121 
  169  C BE518003Ta19P101C08P067G101R1_093.ab1   506 
  259    BE518003Ta19P101C08P067G101F1_093.ab1   215 
  334  C BE518003Ta19P101C08P067G101R1_093.ab1   339 
  338    BE518003Ta19P101C08P067G101F1_093.ab1   294 
  346  C BE518003Ta19P101C08P067G101R1_093.ab1   327 
  370    BE518003Ta19P101C08P067G101F1_093.ab1   326 
  380  C BE518003Ta19P101C08P067G101R1_093.ab1   293 
  415    BE518003Ta19P101C08P067G101F1_093.ab1   371 
  428  C BE518003Ta19P101C08P067G101R1_093.ab1   245 
  468    BE518003Ta19P101C08P067G101F1_093.ab1   424 
  547  C BE518003Ta19P101C08P067G101R1_093.ab1   126 
Contig length: old 675, new 672

Contig length: old 672, new 673
New start: 0 
I Change at: 71; seg lengths: entry 1, contig 0
S Change at: 129; seg lengths: entry 1, contig 1
S Change at: 184; seg lengths: entry 4, contig 4
S Change at: 209; seg lengths: entry 1, contig 1
S Change at: 249; seg lengths: entry 4, contig 4
S Change at: 267; seg lengths: entry 1, contig 1
S Change at: 396; seg lengths: entry 1, contig 1
S Change at: 460; seg lengths: entry 1, contig 1
S Change at: 484; seg lengths: entry 6, contig 6
S Change at: 495; seg lengths: entry 5, contig 5
S Change at: 513; seg lengths: entry 3, contig 3
S Change at: 570; seg lengths: entry 1, contig 1