No. words: 1208; after pruning: 1182


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.3 -1.3 (1,1:633)  352  9.79 0.38 0.00  BE518003Ta23P101C08P067G101F1_089.ab1        1   521 (1)  C BE518003Ta23P101C08P067G101R1_089.ab1   (51)   635   113 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.3       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C BE518003Ta23P101C08P067G101R1_089.ab1   686 
   62    BE518003Ta23P101C08P067G101F1_089.ab1    10 
   85  C BE518003Ta23P101C08P067G101R1_089.ab1   601 
   89    BE518003Ta23P101C08P067G101F1_089.ab1    37 
  123  C BE518003Ta23P101C08P067G101R1_089.ab1   563 
  127    BE518003Ta23P101C08P067G101F1_089.ab1    75 
  135  C BE518003Ta23P101C08P067G101R1_089.ab1   551 
  143    BE518003Ta23P101C08P067G101F1_089.ab1    91 
  151  C BE518003Ta23P101C08P067G101R1_089.ab1   535 
  163    BE518003Ta23P101C08P067G101F1_089.ab1   111 
  173  C BE518003Ta23P101C08P067G101R1_089.ab1   513 
  181    BE518003Ta23P101C08P067G101F1_089.ab1   129 
  185  C BE518003Ta23P101C08P067G101R1_089.ab1   501 
  284    BE518003Ta23P101C08P067G101F1_089.ab1   232 
  288  C BE518003Ta23P101C08P067G101R1_089.ab1   398 
  292    BE518003Ta23P101C08P067G101F1_089.ab1   240 
  296  C BE518003Ta23P101C08P067G101R1_089.ab1   390 
  328    BE518003Ta23P101C08P067G101F1_089.ab1   276 
  332  C BE518003Ta23P101C08P067G101R1_089.ab1   354 
  384    BE518003Ta23P101C08P067G101F1_089.ab1   332 
  398  C BE518003Ta23P101C08P067G101R1_089.ab1   288 
  455    BE518003Ta23P101C08P067G101F1_089.ab1   403 
  459  C BE518003Ta23P101C08P067G101R1_089.ab1   227 
  471    BE518003Ta23P101C08P067G101F1_089.ab1   419 
  475  C BE518003Ta23P101C08P067G101R1_089.ab1   211 
Contig length: old 686, new 685

Contig length: old 685, new 686
New start: 0 
I Change at: 70; seg lengths: entry 1, contig 0
S Change at: 225; seg lengths: entry 1, contig 1
S Change at: 251; seg lengths: entry 1, contig 1
S Change at: 273; seg lengths: entry 4, contig 4
S Change at: 423; seg lengths: entry 1, contig 1
S Change at: 439; seg lengths: entry 1, contig 1
S Change at: 482; seg lengths: entry 1, contig 1
S Change at: 518; seg lengths: entry 3, contig 3
S Change at: 527; seg lengths: entry 3, contig 3
S Change at: 543; seg lengths: entry 1, contig 1
S Change at: 551; seg lengths: entry 1, contig 1