No. words: 1217; after pruning: 1191


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.8 -3.8 (1,1:637)  269 15.66 0.19 0.00  BE518003Ta24P101C08P067G101F1_090.ab1        1   530 (0)  C BE518003Ta24P101C08P067G101R1_090.ab1   (49)   638   108 *
  Worst pair: offset 1 
LLR breakdown: discreps: -13.8 (<20 part: -13.8 (#=84), >20:0.0 (#=0); in HQ: -13.8, out HQ 0.0), match: 10.0  total: -3.8  269 15.66 0.19 0.00  BE518003Ta24P101C08P067G101F1_090.ab1        1   530 (0)  C BE518003Ta24P101C08P067G101R1_090.ab1   (49)   638   108 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1  C BE518003Ta24P101C08P067G101R1_090.ab1   687 
   72    BE518003Ta24P101C08P067G101F1_090.ab1    23 
  155  C BE518003Ta24P101C08P067G101R1_090.ab1   533 
  159    BE518003Ta24P101C08P067G101F1_090.ab1   110 
  167  C BE518003Ta24P101C08P067G101R1_090.ab1   521 
  199    BE518003Ta24P101C08P067G101F1_090.ab1   150 
  215  C BE518003Ta24P101C08P067G101R1_090.ab1   473 
  219    BE518003Ta24P101C08P067G101F1_090.ab1   170 
  331  C BE518003Ta24P101C08P067G101R1_090.ab1   357 
  335    BE518003Ta24P101C08P067G101F1_090.ab1   286 
  343  C BE518003Ta24P101C08P067G101R1_090.ab1   344 
  347    BE518003Ta24P101C08P067G101F1_090.ab1   298 
  357  C BE518003Ta24P101C08P067G101R1_090.ab1   330 
  410    BE518003Ta24P101C08P067G101F1_090.ab1   361 
  545  C BE518003Ta24P101C08P067G101R1_090.ab1   142 
  565    BE518003Ta24P101C08P067G101F1_090.ab1   516 
  569  C BE518003Ta24P101C08P067G101R1_090.ab1   118 
Contig length: old 687, new 686

Contig length: old 686, new 686
New start: 0 
S Change at: 181; seg lengths: entry 4, contig 4
S Change at: 211; seg lengths: entry 1, contig 1
S Change at: 227; seg lengths: entry 1, contig 1
S Change at: 253; seg lengths: entry 1, contig 1
S Change at: 262; seg lengths: entry 3, contig 3
S Change at: 374; seg lengths: entry 1, contig 1
S Change at: 384; seg lengths: entry 1, contig 1
S Change at: 437; seg lengths: entry 1, contig 1
S Change at: 450; seg lengths: entry 1, contig 1
S Change at: 486; seg lengths: entry 1, contig 1
S Change at: 492; seg lengths: entry 4, contig 4
S Change at: 510; seg lengths: entry 3, contig 3