No. words: 1342; after pruning: 1316


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.9 (1,1:636)  462  7.52 0.31 0.47  BE518003Td08P101C08P067G101F1_074.ab1        1   638 (18)  C BE518003Td08P101C08P067G101R1_074.ab1   (49)   637     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C BE518003Td08P101C08P067G101R1_074.ab1   686 
   53    BE518003Td08P101C08P067G101F1_074.ab1     4 
   83  C BE518003Td08P101C08P067G101R1_074.ab1   603 
   91    BE518003Td08P101C08P067G101F1_074.ab1    42 
  117  C BE518003Td08P101C08P067G101R1_074.ab1   569 
  125    BE518003Td08P101C08P067G101F1_074.ab1    76 
  129  C BE518003Td08P101C08P067G101R1_074.ab1   557 
  141    BE518003Td08P101C08P067G101F1_074.ab1    92 
  149  C BE518003Td08P101C08P067G101R1_074.ab1   537 
  202    BE518003Td08P101C08P067G101F1_074.ab1   154 
  214  C BE518003Td08P101C08P067G101R1_074.ab1   472 
  274    BE518003Td08P101C08P067G101F1_074.ab1   226 
  278  C BE518003Td08P101C08P067G101R1_074.ab1   408 
  282    BE518003Td08P101C08P067G101F1_074.ab1   234 
  286  C BE518003Td08P101C08P067G101R1_074.ab1   400 
  326    BE518003Td08P101C08P067G101F1_074.ab1   278 
  330  C BE518003Td08P101C08P067G101R1_074.ab1   356 
  448    BE518003Td08P101C08P067G101F1_074.ab1   400 
  460  C BE518003Td08P101C08P067G101R1_074.ab1   226 
  472    BE518003Td08P101C08P067G101F1_074.ab1   424 
  485  C BE518003Td08P101C08P067G101R1_074.ab1   201 
  535    BE518003Td08P101C08P067G101F1_074.ab1   486 
  549  C BE518003Td08P101C08P067G101R1_074.ab1   137 
  614    BE518003Td08P101C08P067G101F1_074.ab1   565 
  626  C BE518003Td08P101C08P067G101R1_074.ab1    60 
  667    BE518003Td08P101C08P067G101F1_074.ab1   619 
Contig length: old 705, new 704

Contig length: old 704, new 706
New start: 0 
I Change at: 68; seg lengths: entry 1, contig 0
S Change at: 168; seg lengths: entry 1, contig 1
I Change at: 196; seg lengths: entry 1, contig 0
S Change at: 224; seg lengths: entry 1, contig 1
S Change at: 250; seg lengths: entry 1, contig 1
S Change at: 254; seg lengths: entry 1, contig 1
S Change at: 272; seg lengths: entry 1, contig 1
S Change at: 376; seg lengths: entry 1, contig 1
S Change at: 384; seg lengths: entry 1, contig 1
S Change at: 394; seg lengths: entry 1, contig 1
S Change at: 422; seg lengths: entry 1, contig 1
S Change at: 438; seg lengths: entry 1, contig 1
S Change at: 517; seg lengths: entry 3, contig 3
S Change at: 636; seg lengths: entry 1, contig 1
S Change at: 684; seg lengths: entry 1, contig 1