No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.0 (1,1:584)  520  2.57 0.00 0.34  BE518003Td09P067G04P101E081F2_007.ab1        1   584 (24)  C BE518003Td09P067G04P101E081R2_007.ab1   (62)   583     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BE518003Td09P067G04P101E081R2_007.ab1   645 
   78    BE518003Td09P067G04P101E081F2_007.ab1    16 
   96  C BE518003Td09P067G04P101E081R2_007.ab1   550 
  108    BE518003Td09P067G04P101E081F2_007.ab1    46 
  112  C BE518003Td09P067G04P101E081R2_007.ab1   534 
  124    BE518003Td09P067G04P101E081F2_007.ab1    62 
  128  C BE518003Td09P067G04P101E081R2_007.ab1   518 
  147    BE518003Td09P067G04P101E081F2_007.ab1    86 
  151  C BE518003Td09P067G04P101E081R2_007.ab1   495 
  155    BE518003Td09P067G04P101E081F2_007.ab1    94 
  159  C BE518003Td09P067G04P101E081R2_007.ab1   487 
  192    BE518003Td09P067G04P101E081F2_007.ab1   131 
  196  C BE518003Td09P067G04P101E081R2_007.ab1   450 
  204    BE518003Td09P067G04P101E081F2_007.ab1   143 
  215  C BE518003Td09P067G04P101E081R2_007.ab1   431 
  227    BE518003Td09P067G04P101E081F2_007.ab1   166 
  251  C BE518003Td09P067G04P101E081R2_007.ab1   395 
  255    BE518003Td09P067G04P101E081F2_007.ab1   194 
  263  C BE518003Td09P067G04P101E081R2_007.ab1   383 
  271    BE518003Td09P067G04P101E081F2_007.ab1   210 
  279  C BE518003Td09P067G04P101E081R2_007.ab1   367 
  283    BE518003Td09P067G04P101E081F2_007.ab1   222 
  291  C BE518003Td09P067G04P101E081R2_007.ab1   355 
  300    BE518003Td09P067G04P101E081F2_007.ab1   239 
  311  C BE518003Td09P067G04P101E081R2_007.ab1   335 
  323    BE518003Td09P067G04P101E081F2_007.ab1   262 
  327  C BE518003Td09P067G04P101E081R2_007.ab1   319 
  422    BE518003Td09P067G04P101E081F2_007.ab1   361 
  426  C BE518003Td09P067G04P101E081R2_007.ab1   220 
  639    BE518003Td09P067G04P101E081F2_007.ab1   579 
Contig length: old 668, new 668

Contig length: old 668, new 668
New start: 0 
S Change at: 84; seg lengths: entry 1, contig 1