No. words: 1439; after pruning: 1413


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.2 (1,1:564)  523  0.00 0.18 0.36  BE518446Ld03P026B09P026F111F1_032.ab1        1   561 (170)  C BE518446Ld03P026B09P026F111R1_032.ab1   (143)   565     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C BE518446Ld03P026B09P026F111R1_032.ab1   708 
  205    BE518446Ld03P026B09P026F111F1_032.ab1    61 
  209  C BE518446Ld03P026B09P026F111R1_032.ab1   500 
  213    BE518446Ld03P026B09P026F111F1_032.ab1    69 
  229  C BE518446Ld03P026B09P026F111R1_032.ab1   480 
  233    BE518446Ld03P026B09P026F111F1_032.ab1    89 
  237  C BE518446Ld03P026B09P026F111R1_032.ab1   472 
  245    BE518446Ld03P026B09P026F111F1_032.ab1   101 
  249  C BE518446Ld03P026B09P026F111R1_032.ab1   460 
  277    BE518446Ld03P026B09P026F111F1_032.ab1   133 
  349  C BE518446Ld03P026B09P026F111R1_032.ab1   360 
  389    BE518446Ld03P026B09P026F111F1_032.ab1   245 
  417  C BE518446Ld03P026B09P026F111R1_032.ab1   292 
  425    BE518446Ld03P026B09P026F111F1_032.ab1   281 
  481  C BE518446Ld03P026B09P026F111R1_032.ab1   228 
  501    BE518446Ld03P026B09P026F111F1_032.ab1   357 
  505  C BE518446Ld03P026B09P026F111R1_032.ab1   204 
  513    BE518446Ld03P026B09P026F111F1_032.ab1   369 
  517  C BE518446Ld03P026B09P026F111R1_032.ab1   192 
  541    BE518446Ld03P026B09P026F111F1_032.ab1   397 
  569  C BE518446Ld03P026B09P026F111R1_032.ab1   140 
  581    BE518446Ld03P026B09P026F111F1_032.ab1   437 
  585  C BE518446Ld03P026B09P026F111R1_032.ab1   124 
  589    BE518446Ld03P026B09P026F111F1_032.ab1   445 
  605  C BE518446Ld03P026B09P026F111R1_032.ab1   104 
  621    BE518446Ld03P026B09P026F111F1_032.ab1   477 
  637  C BE518446Ld03P026B09P026F111R1_032.ab1    72 
  645    BE518446Ld03P026B09P026F111F1_032.ab1   501 
Contig length: old 874, new 875

Contig length: old 875, new 875
New start: 0