No. words: 2128; after pruning: 2076


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   86    0.0 9.7 (1,1:2)  422  0.00 0.00 0.00  BE586090Ld01P026D09P026H111R1_090.ab1        3   441 (130)    BE586090Ld01P026D09P026H111R1_023.ab1        1   439 (86)  
Merge:(0)   68    0.0 9.3 (1,1:-16)  410  0.46 0.00 0.00  BE586090Ld01P026D09P026H111F1_090.ab1        1   431 (86)    BE586090Ld01P026D09P026H111F1_023.ab1       17   447 (68)  
Merge:(0)    0    0.0 8.4 (2,2:372)  369  0.00 0.26 0.00  BE586090Ld01P026D09P026H111R1_090.ab1        1   389 (182)  C BE586090Ld01P026D09P026H111F1_023.ab1   (125)   390     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       1        0
68       1        0
86       1        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1160 nodes

 222 str. conn. components

Path
    1  C BE586090Ld01P026D09P026H111F1_090.ab1   517 
  140  C BE586090Ld01P026D09P026H111F1_023.ab1   394 
  360    BE586090Ld01P026D09P026H111R1_023.ab1   214 
  582    BE586090Ld01P026D09P026H111R1_090.ab1   438 
Contig length: old 715, new 715

Contig length: old 715, new 715
New start: 0