No. words: 792; after pruning: 766


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.0 (1,1:481)  218  4.12 0.75 0.00  BE591099As01P103B06P103B121F1_065.ab1        3   269 (0)  C BE591099As01P103B06P103B121R1_065.ab1   (42)   481   213 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  112 nodes

 58 str. conn. components

Path
    1  C BE591099As01P103B06P103B121R1_065.ab1   523 
   46    BE591099As01P103B06P103B121F1_065.ab1     6 
   65  C BE591099As01P103B06P103B121R1_065.ab1   458 
   97    BE591099As01P103B06P103B121F1_065.ab1    56 
  101  C BE591099As01P103B06P103B121R1_065.ab1   422 
  132    BE591099As01P103B06P103B121F1_065.ab1    91 
  148  C BE591099As01P103B06P103B121R1_065.ab1   375 
  156    BE591099As01P103B06P103B121F1_065.ab1   115 
  164  C BE591099As01P103B06P103B121R1_065.ab1   359 
  176    BE591099As01P103B06P103B121F1_065.ab1   135 
  188  C BE591099As01P103B06P103B121R1_065.ab1   335 
Contig length: old 523, new 522

Contig length: old 522, new 523
New start: 0 
I Change at: 60; seg lengths: entry 1, contig 0