No. words: 1232; after pruning: 1206


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.0 (1,1:480)  468  0.00 0.21 0.00  BE591099Ld09P103B06P103B121F1_022.ab1        5   481 (131)  C BE591099Ld09P103B06P103B121R1_022.ab1   (142)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BE591099Ld09P103B06P103B121R1_022.ab1   620 
  278    BE591099Ld09P103B06P103B121F1_022.ab1   139 
  374  C BE591099Ld09P103B06P103B121R1_022.ab1   247 
  378    BE591099Ld09P103B06P103B121F1_022.ab1   239 
  442  C BE591099Ld09P103B06P103B121R1_022.ab1   179 
  446    BE591099Ld09P103B06P103B121F1_022.ab1   307 
Contig length: old 751, new 751

Contig length: old 751, new 751
New start: 0