No. words: 675; after pruning: 649


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:346)  177  0.00 0.54 0.00  BE591181Ld05P026G09P026C121F1_044.ab1        1   185 (0)  C BE591181Ld05P026G09P026C121R1_044.ab1   (142)   348   163 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C BE591181Ld05P026G09P026C121R1_044.ab1   490 
  200    BE591181Ld05P026G09P026C121F1_044.ab1    57 
  212  C BE591181Ld05P026G09P026C121R1_044.ab1   279 
  216    BE591181Ld05P026G09P026C121F1_044.ab1    73 
  228  C BE591181Ld05P026G09P026C121R1_044.ab1   263 
  236    BE591181Ld05P026G09P026C121F1_044.ab1    93 
  244  C BE591181Ld05P026G09P026C121R1_044.ab1   247 
  268    BE591181Ld05P026G09P026C121F1_044.ab1   125 
  276  C BE591181Ld05P026G09P026C121R1_044.ab1   215 
Contig length: old 490, new 490

Contig length: old 490, new 490
New start: 0