No. words: 1043; after pruning: 1017


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.8 (1,1:357)  348  0.00 0.28 0.00  BE591181Ld07P026G09P026C121F1_040.ab1        4   358 (178)  C BE591181Ld07P026G09P026C121R1_040.ab1   (151)   356     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BE591181Ld07P026G09P026C121R1_040.ab1   507 
  179    BE591181Ld07P026G09P026C121F1_040.ab1    30 
  191  C BE591181Ld07P026G09P026C121R1_040.ab1   317 
  203    BE591181Ld07P026G09P026C121F1_040.ab1    54 
  231  C BE591181Ld07P026G09P026C121R1_040.ab1   277 
  247    BE591181Ld07P026G09P026C121F1_040.ab1    98 
  259  C BE591181Ld07P026G09P026C121R1_040.ab1   249 
  267    BE591181Ld07P026G09P026C121F1_040.ab1   118 
  287  C BE591181Ld07P026G09P026C121R1_040.ab1   221 
  295    BE591181Ld07P026G09P026C121F1_040.ab1   146 
  431  C BE591181Ld07P026G09P026C121R1_040.ab1    77 
  435    BE591181Ld07P026G09P026C121F1_040.ab1   286 
  443  C BE591181Ld07P026G09P026C121R1_040.ab1    65 
  447    BE591181Ld07P026G09P026C121F1_040.ab1   298 
  463  C BE591181Ld07P026G09P026C121R1_040.ab1    45 
  471    BE591181Ld07P026G09P026C121F1_040.ab1   322 
  479  C BE591181Ld07P026G09P026C121R1_040.ab1    29 
  483    BE591181Ld07P026G09P026C121F1_040.ab1   334 
Contig length: old 685, new 685

Contig length: old 685, new 685
New start: 0