No. words: 1035; after pruning: 1009


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 2.1 (1,1:358)  351  0.00 0.00 0.28  BE591181Ld08P026G09P026C121F1_038.ab1        2   359 (178)  C BE591181Ld08P026G09P026C121R1_038.ab1   (141)   357     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C BE591181Ld08P026G09P026C121R1_038.ab1   498 
  305    BE591181Ld08P026G09P026C121F1_038.ab1   165 
  333  C BE591181Ld08P026G09P026C121R1_038.ab1   166 
  385    BE591181Ld08P026G09P026C121F1_038.ab1   245 
  397  C BE591181Ld08P026G09P026C121R1_038.ab1   102 
  405    BE591181Ld08P026G09P026C121F1_038.ab1   265 
  413  C BE591181Ld08P026G09P026C121R1_038.ab1    86 
  441    BE591181Ld08P026G09P026C121F1_038.ab1   301 
  471  C BE591181Ld08P026G09P026C121R1_038.ab1    29 
  475    BE591181Ld08P026G09P026C121F1_038.ab1   335 
Contig length: old 676, new 677

Contig length: old 677, new 677
New start: 0