No. words: 1589; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:805)  754  0.51 0.00 0.00  BE591222As02P078E03P078E091F1_076.ab1       22   804 (0)  C BE591222As02P078E03P078E091R1_076.ab1   (0)   785     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1    BE591222As02P078E03P078E091F1_076.ab1     1 
  154  C BE591222As02P078E03P078E091R1_076.ab1   653 
  158    BE591222As02P078E03P078E091F1_076.ab1   158 
  282  C BE591222As02P078E03P078E091R1_076.ab1   525 
  286    BE591222As02P078E03P078E091F1_076.ab1   286 
  302  C BE591222As02P078E03P078E091R1_076.ab1   505 
  318    BE591222As02P078E03P078E091F1_076.ab1   318 
  350  C BE591222As02P078E03P078E091R1_076.ab1   457 
  362    BE591222As02P078E03P078E091F1_076.ab1   362 
  374  C BE591222As02P078E03P078E091R1_076.ab1   433 
  378    BE591222As02P078E03P078E091F1_076.ab1   378 
  390  C BE591222As02P078E03P078E091R1_076.ab1   417 
  406    BE591222As02P078E03P078E091F1_076.ab1   406 
  410  C BE591222As02P078E03P078E091R1_076.ab1   397 
  422    BE591222As02P078E03P078E091F1_076.ab1   422 
  426  C BE591222As02P078E03P078E091R1_076.ab1   381 
  430    BE591222As02P078E03P078E091F1_076.ab1   430 
  434  C BE591222As02P078E03P078E091R1_076.ab1   373 
  442    BE591222As02P078E03P078E091F1_076.ab1   442 
  450  C BE591222As02P078E03P078E091R1_076.ab1   357 
  482    BE591222As02P078E03P078E091F1_076.ab1   482 
  502  C BE591222As02P078E03P078E091R1_076.ab1   305 
  534    BE591222As02P078E03P078E091F1_076.ab1   534 
  554  C BE591222As02P078E03P078E091R1_076.ab1   253 
  566    BE591222As02P078E03P078E091F1_076.ab1   566 
  578  C BE591222As02P078E03P078E091R1_076.ab1   229 
  586    BE591222As02P078E03P078E091F1_076.ab1   586 
  590  C BE591222As02P078E03P078E091R1_076.ab1   217 
  606    BE591222As02P078E03P078E091F1_076.ab1   606 
  614  C BE591222As02P078E03P078E091R1_076.ab1   193 
Contig length: old 806, new 806

Contig length: old 806, new 806
New start: 0