No. words: 1477; after pruning: 1437


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:866)  579  0.16 0.16 0.33  BE591222At02P078E03P078E091F1_072.ab1       72   682 (0)  C BE591222At02P078E03P078E091R1_072.ab1   (0)   795   186 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    BE591222At02P078E03P078E091F1_072.ab1     1 
  308  C BE591222At02P078E03P078E091R1_072.ab1   560 
  316    BE591222At02P078E03P078E091F1_072.ab1   316 
  340  C BE591222At02P078E03P078E091R1_072.ab1   528 
  344    BE591222At02P078E03P078E091F1_072.ab1   344 
  352  C BE591222At02P078E03P078E091R1_072.ab1   516 
  356    BE591222At02P078E03P078E091F1_072.ab1   356 
  364  C BE591222At02P078E03P078E091R1_072.ab1   504 
  368    BE591222At02P078E03P078E091F1_072.ab1   368 
  380  C BE591222At02P078E03P078E091R1_072.ab1   488 
  384    BE591222At02P078E03P078E091F1_072.ab1   384 
  404  C BE591222At02P078E03P078E091R1_072.ab1   464 
  408    BE591222At02P078E03P078E091F1_072.ab1   408 
  416  C BE591222At02P078E03P078E091R1_072.ab1   452 
  424    BE591222At02P078E03P078E091F1_072.ab1   424 
  440  C BE591222At02P078E03P078E091R1_072.ab1   428 
  444    BE591222At02P078E03P078E091F1_072.ab1   444 
  452  C BE591222At02P078E03P078E091R1_072.ab1   416 
  464    BE591222At02P078E03P078E091F1_072.ab1   464 
  472  C BE591222At02P078E03P078E091R1_072.ab1   396 
  488    BE591222At02P078E03P078E091F1_072.ab1   488 
  508  C BE591222At02P078E03P078E091R1_072.ab1   360 
  544    BE591222At02P078E03P078E091F1_072.ab1   544 
  548  C BE591222At02P078E03P078E091R1_072.ab1   320 
  568    BE591222At02P078E03P078E091F1_072.ab1   568 
  576  C BE591222At02P078E03P078E091R1_072.ab1   292 
  580    BE591222At02P078E03P078E091F1_072.ab1   580 
  600  C BE591222At02P078E03P078E091R1_072.ab1   268 
  629    BE591222At02P078E03P078E091F1_072.ab1   629 
  633  C BE591222At02P078E03P078E091R1_072.ab1   235 
  669    BE591222At02P078E03P078E091F1_072.ab1   669 
  673  C BE591222At02P078E03P078E091R1_072.ab1   195 
Contig length: old 867, new 867

Contig length: old 867, new 867
New start: 0