No. words: 1338; after pruning: 1312


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.7 (1,1:756)  560  0.00 0.17 0.17  BE591222Ld05P078E03P078E091F1_040.ab1      103   682 (0)  C BE591222Ld05P078E03P078E091R1_040.ab1   (1)   655    76 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1    BE591222Ld05P078E03P078E091F1_040.ab1     1 
  306  C BE591222Ld05P078E03P078E091R1_040.ab1   452 
  310    BE591222Ld05P078E03P078E091F1_040.ab1   310 
  318  C BE591222Ld05P078E03P078E091R1_040.ab1   440 
  338    BE591222Ld05P078E03P078E091F1_040.ab1   338 
  346  C BE591222Ld05P078E03P078E091R1_040.ab1   412 
  370    BE591222Ld05P078E03P078E091F1_040.ab1   370 
  382  C BE591222Ld05P078E03P078E091R1_040.ab1   376 
  402    BE591222Ld05P078E03P078E091F1_040.ab1   402 
  478  C BE591222Ld05P078E03P078E091R1_040.ab1   280 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0