No. words: 1268; after pruning: 1228


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:727)  525  0.19 0.00 0.00  BE591222Ld08P078E03P078E091F1_034.ab1      107   646 (0)  C BE591222Ld08P078E03P078E091R1_034.ab1   (0)   622    83 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    BE591222Ld08P078E03P078E091F1_034.ab1     1 
  298  C BE591222Ld08P078E03P078E091R1_034.ab1   431 
  310    BE591222Ld08P078E03P078E091F1_034.ab1   310 
  382  C BE591222Ld08P078E03P078E091R1_034.ab1   347 
  386    BE591222Ld08P078E03P078E091F1_034.ab1   386 
  466  C BE591222Ld08P078E03P078E091R1_034.ab1   263 
Contig length: old 728, new 728

Contig length: old 728, new 728
New start: 0