No. words: 1363; after pruning: 1337


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.8 (1,1:643)  625  0.00 0.00 0.00  BE591222Sn25P095G09P078E091F1_055.ab1        3   644 (48)  C BE591222Sn25P095G09P078E091R1_055.ab1   (29)   642     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C BE591222Sn25P095G09P078E091R1_055.ab1   671 
   65    BE591222Sn25P095G09P078E091F1_055.ab1    38 
   81  C BE591222Sn25P095G09P078E091R1_055.ab1   591 
  397    BE591222Sn25P095G09P078E091F1_055.ab1   370 
  413  C BE591222Sn25P095G09P078E091R1_055.ab1   259 
  505    BE591222Sn25P095G09P078E091F1_055.ab1   478 
  629  C BE591222Sn25P095G09P078E091R1_055.ab1    43 
  641    BE591222Sn25P095G09P078E091F1_055.ab1   614 
  649  C BE591222Sn25P095G09P078E091R1_055.ab1    23 
  653    BE591222Sn25P095G09P078E091F1_055.ab1   626 
Contig length: old 719, new 719

Contig length: old 719, new 719
New start: 0