No. words: 1443; after pruning: 1417


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:665)  621  1.05 0.00 0.15  BE591222Sn26P095H09P078E091F1_066.ab1        1   666 (47)  C BE591222Sn26P095H09P078E091R1_066.ab1   (65)   665     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C BE591222Sn26P095H09P078E091R1_066.ab1   730 
  184    BE591222Sn26P095H09P078E091F1_066.ab1   119 
  416  C BE591222Sn26P095H09P078E091R1_066.ab1   315 
  432    BE591222Sn26P095H09P078E091F1_066.ab1   367 
  520  C BE591222Sn26P095H09P078E091R1_066.ab1   211 
  524    BE591222Sn26P095H09P078E091F1_066.ab1   459 
  608  C BE591222Sn26P095H09P078E091R1_066.ab1   123 
  612    BE591222Sn26P095H09P078E091F1_066.ab1   547 
  666  C BE591222Sn26P095H09P078E091R1_066.ab1    65 
  670    BE591222Sn26P095H09P078E091F1_066.ab1   605 
Contig length: old 777, new 778

Contig length: old 778, new 778
New start: 0