No. words: 1370; after pruning: 1344


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.6 (1,1:647)  628  0.00 0.00 0.00  BE591222Sn28P095G09P078E091F1_054.ab1        4   648 (47)  C BE591222Sn28P095G09P078E091R1_054.ab1   (30)   645     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C BE591222Sn28P095G09P078E091R1_054.ab1   675 
   66    BE591222Sn28P095G09P078E091F1_054.ab1    39 
   78  C BE591222Sn28P095G09P078E091R1_054.ab1   598 
  534    BE591222Sn28P095G09P078E091F1_054.ab1   507 
  550  C BE591222Sn28P095G09P078E091R1_054.ab1   126 
  574    BE591222Sn28P095G09P078E091F1_054.ab1   547 
  590  C BE591222Sn28P095G09P078E091R1_054.ab1    86 
  618    BE591222Sn28P095G09P078E091F1_054.ab1   591 
  626  C BE591222Sn28P095G09P078E091R1_054.ab1    50 
  642    BE591222Sn28P095G09P078E091F1_054.ab1   615 
Contig length: old 722, new 722

Contig length: old 722, new 722
New start: 0