No. words: 1297; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:784)  498  0.59 0.00 0.00  BE591222Tu01P078E03P078E091F1_065.ab1      131   642 (0)  C BE591222Tu01P078E03P078E091R1_065.ab1   (0)   655   144 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1    BE591222Tu01P078E03P078E091F1_065.ab1     1 
  179  C BE591222Tu01P078E03P078E091R1_065.ab1   607 
  183    BE591222Tu01P078E03P078E091F1_065.ab1   183 
  291  C BE591222Tu01P078E03P078E091R1_065.ab1   495 
  299    BE591222Tu01P078E03P078E091F1_065.ab1   299 
  363  C BE591222Tu01P078E03P078E091R1_065.ab1   423 
  371    BE591222Tu01P078E03P078E091F1_065.ab1   371 
  383  C BE591222Tu01P078E03P078E091R1_065.ab1   403 
  391    BE591222Tu01P078E03P078E091F1_065.ab1   391 
  395  C BE591222Tu01P078E03P078E091R1_065.ab1   391 
  407    BE591222Tu01P078E03P078E091F1_065.ab1   407 
  411  C BE591222Tu01P078E03P078E091R1_065.ab1   375 
  415    BE591222Tu01P078E03P078E091F1_065.ab1   415 
  419  C BE591222Tu01P078E03P078E091R1_065.ab1   367 
  427    BE591222Tu01P078E03P078E091F1_065.ab1   427 
  435  C BE591222Tu01P078E03P078E091R1_065.ab1   351 
  447    BE591222Tu01P078E03P078E091F1_065.ab1   447 
  451  C BE591222Tu01P078E03P078E091R1_065.ab1   335 
  471    BE591222Tu01P078E03P078E091F1_065.ab1   471 
  479  C BE591222Tu01P078E03P078E091R1_065.ab1   307 
Contig length: old 785, new 785

Contig length: old 785, new 785
New start: 0