No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.1 (1,1:1089)  229  0.00 0.00 0.00  BE591258Ld02P026H09P026D121F1_035.ab1      410   641 (0)  C BE591258Ld02P026H09P026D121R1_035.ab1   (0)   681   450 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1    BE591258Ld02P026H09P026D121F1_035.ab1     1 
  521  C BE591258Ld02P026H09P026D121R1_035.ab1   570 
  525    BE591258Ld02P026H09P026D121F1_035.ab1   525 
  537  C BE591258Ld02P026H09P026D121R1_035.ab1   554 
  541    BE591258Ld02P026H09P026D121F1_035.ab1   541 
  545  C BE591258Ld02P026H09P026D121R1_035.ab1   546 
Contig length: old 1090, new 1090

Contig length: old 1090, new 1090
New start: 0