No. words: 1215; after pruning: 1189


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:435)  424  0.00 0.00 0.00  BE591466Ld04P026A10P026E121F1_062.ab1        1   436 (160)  C BE591466Ld04P026A10P026E121R1_062.ab1   (183)   436     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C BE591466Ld04P026A10P026E121R1_062.ab1   619 
  227    BE591466Ld04P026A10P026E121F1_062.ab1    44 
  235  C BE591466Ld04P026A10P026E121R1_062.ab1   385 
  247    BE591466Ld04P026A10P026E121F1_062.ab1    64 
  251  C BE591466Ld04P026A10P026E121R1_062.ab1   369 
  275    BE591466Ld04P026A10P026E121F1_062.ab1    92 
  279  C BE591466Ld04P026A10P026E121R1_062.ab1   341 
  287    BE591466Ld04P026A10P026E121F1_062.ab1   104 
  299  C BE591466Ld04P026A10P026E121R1_062.ab1   321 
  343    BE591466Ld04P026A10P026E121F1_062.ab1   160 
  443  C BE591466Ld04P026A10P026E121R1_062.ab1   177 
  515    BE591466Ld04P026A10P026E121F1_062.ab1   332 
  527  C BE591466Ld04P026A10P026E121R1_062.ab1    93 
  539    BE591466Ld04P026A10P026E121F1_062.ab1   356 
  543  C BE591466Ld04P026A10P026E121R1_062.ab1    77 
  575    BE591466Ld04P026A10P026E121F1_062.ab1   392 
  611  C BE591466Ld04P026A10P026E121R1_062.ab1     9 
  615    BE591466Ld04P026A10P026E121F1_062.ab1   432 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0