No. words: 1231; after pruning: 1205


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:449)  438  0.00 0.00 0.00  BE591466Ld05P026A10P026E121F1_060.ab1        1   450 (154)  C BE591466Ld05P026A10P026E121R1_060.ab1   (177)   450     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C BE591466Ld05P026A10P026E121R1_060.ab1   627 
  233    BE591466Ld05P026A10P026E121F1_060.ab1    56 
  257  C BE591466Ld05P026A10P026E121R1_060.ab1   371 
  289    BE591466Ld05P026A10P026E121F1_060.ab1   112 
  293  C BE591466Ld05P026A10P026E121R1_060.ab1   335 
  301    BE591466Ld05P026A10P026E121F1_060.ab1   124 
  317  C BE591466Ld05P026A10P026E121R1_060.ab1   311 
  325    BE591466Ld05P026A10P026E121F1_060.ab1   148 
  337  C BE591466Ld05P026A10P026E121R1_060.ab1   291 
  345    BE591466Ld05P026A10P026E121F1_060.ab1   168 
  373  C BE591466Ld05P026A10P026E121R1_060.ab1   255 
  425    BE591466Ld05P026A10P026E121F1_060.ab1   248 
  445  C BE591466Ld05P026A10P026E121R1_060.ab1   183 
  481    BE591466Ld05P026A10P026E121F1_060.ab1   304 
  485  C BE591466Ld05P026A10P026E121R1_060.ab1   143 
  505    BE591466Ld05P026A10P026E121F1_060.ab1   328 
  529  C BE591466Ld05P026A10P026E121R1_060.ab1    99 
  541    BE591466Ld05P026A10P026E121F1_060.ab1   364 
  545  C BE591466Ld05P026A10P026E121R1_060.ab1    83 
  565    BE591466Ld05P026A10P026E121F1_060.ab1   388 
  569  C BE591466Ld05P026A10P026E121R1_060.ab1    59 
  577    BE591466Ld05P026A10P026E121F1_060.ab1   400 
  589  C BE591466Ld05P026A10P026E121R1_060.ab1    39 
  593    BE591466Ld05P026A10P026E121F1_060.ab1   416 
  601  C BE591466Ld05P026A10P026E121R1_060.ab1    27 
  609    BE591466Ld05P026A10P026E121F1_060.ab1   432 
  617  C BE591466Ld05P026A10P026E121R1_060.ab1    11 
  621    BE591466Ld05P026A10P026E121F1_060.ab1   444 
Contig length: old 781, new 781

Contig length: old 781, new 781
New start: 0