No. words: 1190; after pruning: 1164


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 7.2 (1,1:451)  424  0.00 0.00 0.45  BE591466Ld09P026A10P026E121F1_052.ab1        1   445 (149)  C BE591466Ld09P026A10P026E121R1_052.ab1   (145)   451     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C BE591466Ld09P026A10P026E121R1_052.ab1   596 
  273    BE591466Ld09P026A10P026E121F1_052.ab1   128 
  277  C BE591466Ld09P026A10P026E121R1_052.ab1   320 
  317    BE591466Ld09P026A10P026E121F1_052.ab1   172 
  333  C BE591466Ld09P026A10P026E121R1_052.ab1   264 
  389    BE591466Ld09P026A10P026E121F1_052.ab1   244 
  405  C BE591466Ld09P026A10P026E121R1_052.ab1   192 
  537    BE591466Ld09P026A10P026E121F1_052.ab1   392 
  541  C BE591466Ld09P026A10P026E121R1_052.ab1    56 
  561    BE591466Ld09P026A10P026E121F1_052.ab1   416 
Contig length: old 738, new 739

Contig length: old 739, new 739
New start: 0