No. words: 766; after pruning: 740


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.2 -3.2 (1,1:709)   35  5.26 0.00 3.51  BE591575Ld02P026B10P026F121F1_038.ab1      293   349 (0)  C BE591575Ld02P026B10P026F121R1_038.ab1   (0)   417   363 *
  Worst pair: offset 1 
LLR breakdown: discreps: -4.4 (<20 part: -4.4 (#=5), >20:0.0 (#=0); in HQ: -4.4, out HQ 0.0), match: 1.2  total: -3.2   35  5.26 0.00 3.51  BE591575Ld02P026B10P026F121F1_038.ab1      293   349 (0)  C BE591575Ld02P026B10P026F121R1_038.ab1   (0)   417   363 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  20 nodes

 12 str. conn. components

Path
    1    BE591575Ld02P026B10P026F121F1_038.ab1     1 
  326  C BE591575Ld02P026B10P026F121R1_038.ab1   386 
Contig length: old 710, new 711

Contig length: old 711, new 711
New start: 0