No. words: 1087; after pruning: 1061


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.7 (1,1:589)  487  0.20 0.00 0.00  BE591684As01P078F03P078F091F1_066.ab1       28   523 (0)  C BE591684As01P078F03P078F091R1_066.ab1   (1)   563    68 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1    BE591684As01P078F03P078F091F1_066.ab1     1 
   31  C BE591684As01P078F03P078F091R1_066.ab1   560 
   35    BE591684As01P078F03P078F091F1_066.ab1    35 
  179  C BE591684As01P078F03P078F091R1_066.ab1   412 
  195    BE591684As01P078F03P078F091F1_066.ab1   195 
  203  C BE591684As01P078F03P078F091R1_066.ab1   388 
  211    BE591684As01P078F03P078F091F1_066.ab1   211 
  215  C BE591684As01P078F03P078F091R1_066.ab1   376 
  219    BE591684As01P078F03P078F091F1_066.ab1   219 
  239  C BE591684As01P078F03P078F091R1_066.ab1   352 
  251    BE591684As01P078F03P078F091F1_066.ab1   251 
  287  C BE591684As01P078F03P078F091R1_066.ab1   304 
  291    BE591684As01P078F03P078F091F1_066.ab1   291 
  327  C BE591684As01P078F03P078F091R1_066.ab1   264 
  335    BE591684As01P078F03P078F091F1_066.ab1   335 
  339  C BE591684As01P078F03P078F091R1_066.ab1   252 
  347    BE591684As01P078F03P078F091F1_066.ab1   347 
  363  C BE591684As01P078F03P078F091R1_066.ab1   228 
  379    BE591684As01P078F03P078F091F1_066.ab1   379 
  387  C BE591684As01P078F03P078F091R1_066.ab1   204 
  391    BE591684As01P078F03P078F091F1_066.ab1   391 
  395  C BE591684As01P078F03P078F091R1_066.ab1   196 
  407    BE591684As01P078F03P078F091F1_066.ab1   407 
  411  C BE591684As01P078F03P078F091R1_066.ab1   180 
  427    BE591684As01P078F03P078F091F1_066.ab1   427 
  431  C BE591684As01P078F03P078F091R1_066.ab1   160 
  493    BE591684As01P078F03P078F091F1_066.ab1   493 
  497  C BE591684As01P078F03P078F091R1_066.ab1    94 
Contig length: old 590, new 590

Contig length: old 590, new 590
New start: 0