No. words: 1326; after pruning: 1300


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 8.3 (1,1:529)  500  0.38 0.38 0.19  BE591684Ld01P078F03P078F091F1_061.ab1        7   529 (128)  C BE591684Ld01P078F03P078F091R1_061.ab1   (144)   525     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BE591684Ld01P078F03P078F091R1_061.ab1   669 
  520    BE591684Ld01P078F03P078F091F1_061.ab1   380 
  524  C BE591684Ld01P078F03P078F091R1_061.ab1   146 
  536    BE591684Ld01P078F03P078F091F1_061.ab1   396 
  540  C BE591684Ld01P078F03P078F091R1_061.ab1   130 
  552    BE591684Ld01P078F03P078F091F1_061.ab1   412 
  560  C BE591684Ld01P078F03P078F091R1_061.ab1   110 
  564    BE591684Ld01P078F03P078F091F1_061.ab1   424 
  568  C BE591684Ld01P078F03P078F091R1_061.ab1   102 
  572    BE591684Ld01P078F03P078F091F1_061.ab1   432 
  592  C BE591684Ld01P078F03P078F091R1_061.ab1    78 
  600    BE591684Ld01P078F03P078F091F1_061.ab1   460 
  608  C BE591684Ld01P078F03P078F091R1_061.ab1    62 
  612    BE591684Ld01P078F03P078F091F1_061.ab1   472 
Contig length: old 796, new 797

Contig length: old 797, new 797
New start: 0