No. words: 1365; after pruning: 1325


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.6 (1,1:525)  502  0.00 0.57 0.19  BE591684Ld02P078F03P078F091F1_059.ab1        4   526 (175)  C BE591684Ld02P078F03P078F091R1_059.ab1   (139)   525     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C BE591684Ld02P078F03P078F091R1_059.ab1   664 
  533    BE591684Ld02P078F03P078F091F1_059.ab1   394 
  541  C BE591684Ld02P078F03P078F091R1_059.ab1   124 
  553    BE591684Ld02P078F03P078F091F1_059.ab1   414 
  593  C BE591684Ld02P078F03P078F091R1_059.ab1    72 
  597    BE591684Ld02P078F03P078F091F1_059.ab1   458 
  609  C BE591684Ld02P078F03P078F091R1_059.ab1    56 
  613    BE591684Ld02P078F03P078F091F1_059.ab1   474 
  633  C BE591684Ld02P078F03P078F091R1_059.ab1    32 
  637    BE591684Ld02P078F03P078F091F1_059.ab1   498 
Contig length: old 839, new 840

Contig length: old 840, new 840
New start: 0 
S Change at: 797; seg lengths: entry 1, contig 1