No. words: 1362; after pruning: 1322


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:522)  498  0.19 0.57 0.19  BE591684Ld03P078F03P078F091F1_057.ab1        2   523 (176)  C BE591684Ld03P078F03P078F091R1_057.ab1   (139)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BE591684Ld03P078F03P078F091R1_057.ab1   663 
  502    BE591684Ld03P078F03P078F091F1_057.ab1   361 
  510  C BE591684Ld03P078F03P078F091R1_057.ab1   154 
  534    BE591684Ld03P078F03P078F091F1_057.ab1   393 
  542  C BE591684Ld03P078F03P078F091R1_057.ab1   122 
  550    BE591684Ld03P078F03P078F091F1_057.ab1   409 
  558  C BE591684Ld03P078F03P078F091R1_057.ab1   106 
  562    BE591684Ld03P078F03P078F091F1_057.ab1   421 
  603  C BE591684Ld03P078F03P078F091R1_057.ab1    61 
  611    BE591684Ld03P078F03P078F091F1_057.ab1   470 
  635  C BE591684Ld03P078F03P078F091R1_057.ab1    29 
  639    BE591684Ld03P078F03P078F091F1_057.ab1   498 
Contig length: old 839, new 840

Contig length: old 840, new 840
New start: 0 
S Change at: 797; seg lengths: entry 1, contig 1