No. words: 1323; after pruning: 1283


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.7 (1,1:527)  509  0.00 0.57 0.00  BE591684Ld04P078F03P078F091F1_055.ab1        2   526 (128)  C BE591684Ld04P078F03P078F091R1_055.ab1   (140)   529     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C BE591684Ld04P078F03P078F091R1_055.ab1   669 
  198    BE591684Ld04P078F03P078F091F1_055.ab1    56 
  202  C BE591684Ld04P078F03P078F091R1_055.ab1   468 
  218    BE591684Ld04P078F03P078F091F1_055.ab1    76 
  222  C BE591684Ld04P078F03P078F091R1_055.ab1   448 
  554    BE591684Ld04P078F03P078F091F1_055.ab1   412 
  570  C BE591684Ld04P078F03P078F091R1_055.ab1   100 
  574    BE591684Ld04P078F03P078F091F1_055.ab1   432 
  606  C BE591684Ld04P078F03P078F091R1_055.ab1    64 
  614    BE591684Ld04P078F03P078F091F1_055.ab1   472 
  634  C BE591684Ld04P078F03P078F091R1_055.ab1    36 
  650    BE591684Ld04P078F03P078F091F1_055.ab1   508 
Contig length: old 795, new 796

Contig length: old 796, new 796
New start: 0 
S Change at: 42; seg lengths: entry 1, contig 1