No. words: 1307; after pruning: 1281


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:509)  488  0.59 0.20 0.20  BE591684Ld09P078F03P078F091F1_062.ab1        1   510 (130)  C BE591684Ld09P078F03P078F091R1_062.ab1   (157)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BE591684Ld09P078F03P078F091R1_062.ab1   667 
  523    BE591684Ld09P078F03P078F091F1_062.ab1   365 
  527  C BE591684Ld09P078F03P078F091R1_062.ab1   141 
  535    BE591684Ld09P078F03P078F091F1_062.ab1   377 
  543  C BE591684Ld09P078F03P078F091R1_062.ab1   125 
  563    BE591684Ld09P078F03P078F091F1_062.ab1   405 
  607  C BE591684Ld09P078F03P078F091R1_062.ab1    61 
  615    BE591684Ld09P078F03P078F091F1_062.ab1   457 
  635  C BE591684Ld09P078F03P078F091R1_062.ab1    33 
  643    BE591684Ld09P078F03P078F091F1_062.ab1   485 
Contig length: old 797, new 798

Contig length: old 798, new 798
New start: 0