No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 8.4 (1,1:488)  469  0.21 0.21 0.00  BE591684Ld10P078F03P078F091F1_060.ab1        8   489 (165)  C BE591684Ld10P078F03P078F091R1_060.ab1   (144)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BE591684Ld10P078F03P078F091R1_060.ab1   627 
  227    BE591684Ld10P078F03P078F091F1_060.ab1    89 
  235  C BE591684Ld10P078F03P078F091R1_060.ab1   393 
  243    BE591684Ld10P078F03P078F091F1_060.ab1   105 
  251  C BE591684Ld10P078F03P078F091R1_060.ab1   377 
  271    BE591684Ld10P078F03P078F091F1_060.ab1   133 
  279  C BE591684Ld10P078F03P078F091R1_060.ab1   349 
  535    BE591684Ld10P078F03P078F091F1_060.ab1   397 
  547  C BE591684Ld10P078F03P078F091R1_060.ab1    81 
  563    BE591684Ld10P078F03P078F091F1_060.ab1   425 
  599  C BE591684Ld10P078F03P078F091R1_060.ab1    29 
  603    BE591684Ld10P078F03P078F091F1_060.ab1   465 
Contig length: old 792, new 792

Contig length: old 792, new 792
New start: 0