No. words: 1326; after pruning: 1300


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.9 (1,1:531)  523  0.00 0.00 0.00  BE591684Ld11P078F03P078F091F1_091.ab1        4   531 (128)  C BE591684Ld11P078F03P078F091R1_091.ab1   (138)   529     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE591684Ld11P078F03P078F091R1_091.ab1   667 
  566    BE591684Ld11P078F03P078F091F1_091.ab1   431 
  590  C BE591684Ld11P078F03P078F091R1_091.ab1    78 
  594    BE591684Ld11P078F03P078F091F1_091.ab1   459 
  602  C BE591684Ld11P078F03P078F091R1_091.ab1    66 
  618    BE591684Ld11P078F03P078F091F1_091.ab1   483 
  630  C BE591684Ld11P078F03P078F091R1_091.ab1    38 
  638    BE591684Ld11P078F03P078F091F1_091.ab1   503 
Contig length: old 794, new 794

Contig length: old 794, new 794
New start: 0