No. words: 1334; after pruning: 1308


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 8.9 (1,1:535)  523  0.00 0.00 0.00  BE591684Ld17P078F03P078F091F1_094.ab1        8   535 (128)  C BE591684Ld17P078F03P078F091R1_094.ab1   (142)   529     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE591684Ld17P078F03P078F091R1_094.ab1   671 
  554    BE591684Ld17P078F03P078F091F1_094.ab1   419 
  562  C BE591684Ld17P078F03P078F091R1_094.ab1   110 
  566    BE591684Ld17P078F03P078F091F1_094.ab1   431 
  574  C BE591684Ld17P078F03P078F091R1_094.ab1    98 
  578    BE591684Ld17P078F03P078F091F1_094.ab1   443 
  606  C BE591684Ld17P078F03P078F091R1_094.ab1    66 
  614    BE591684Ld17P078F03P078F091F1_094.ab1   479 
  634  C BE591684Ld17P078F03P078F091R1_094.ab1    38 
  642    BE591684Ld17P078F03P078F091F1_094.ab1   507 
Contig length: old 798, new 798

Contig length: old 798, new 798
New start: 0