No. words: 1375; after pruning: 1349


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 8.5 (1,1:535)  523  0.00 0.00 0.00  BE591684Ld21P078F03P078F091F1_086.ab1        8   535 (144)  C BE591684Ld21P078F03P078F091R1_086.ab1   (167)   529     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE591684Ld21P078F03P078F091R1_086.ab1   696 
  255    BE591684Ld21P078F03P078F091F1_086.ab1    95 
  259  C BE591684Ld21P078F03P078F091R1_086.ab1   438 
  291    BE591684Ld21P078F03P078F091F1_086.ab1   131 
  299  C BE591684Ld21P078F03P078F091R1_086.ab1   398 
  547    BE591684Ld21P078F03P078F091F1_086.ab1   387 
  555  C BE591684Ld21P078F03P078F091R1_086.ab1   142 
  579    BE591684Ld21P078F03P078F091F1_086.ab1   419 
  587  C BE591684Ld21P078F03P078F091R1_086.ab1   110 
  595    BE591684Ld21P078F03P078F091F1_086.ab1   435 
  635  C BE591684Ld21P078F03P078F091R1_086.ab1    62 
  647    BE591684Ld21P078F03P078F091F1_086.ab1   487 
  659  C BE591684Ld21P078F03P078F091R1_086.ab1    38 
  667    BE591684Ld21P078F03P078F091F1_086.ab1   507 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0