No. words: 1455; after pruning: 1429


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -3.3 -3.3 (1,1:1100)  273  0.87 1.45 2.03  BE591948Ld07P026D10P026H121F1_079.ab1      394   738 (3)  C BE591948Ld07P026D10P026H121R1_079.ab1   (11)   703   361 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.7 (<20 part: -7.7 (#=15), >20:0.0 (#=0); in HQ: -7.7, out HQ 0.0), match: 7.5  trail: -0.3  lead: -2.8  total: -3.3  273  0.87 1.45 2.03  BE591948Ld07P026D10P026H121F1_079.ab1      394   738 (3)  C BE591948Ld07P026D10P026H121R1_079.ab1   (11)   703   361 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.3       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    BE591948Ld07P026D10P026H121F1_079.ab1     1 
  534  C BE591948Ld07P026D10P026H121R1_079.ab1   570 
  542    BE591948Ld07P026D10P026H121F1_079.ab1   542 
  562  C BE591948Ld07P026D10P026H121R1_079.ab1   542 
  570    BE591948Ld07P026D10P026H121F1_079.ab1   570 
  578  C BE591948Ld07P026D10P026H121R1_079.ab1   526 
Contig length: old 1101, new 1103

Contig length: old 1103, new 1103
New start: 0