No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:423)  406  0.47 0.00 0.00  BE604885Ld11P129F05P129F111F1_056.ab1        1   424 (147)  C BE604885Ld11P129F05P129F111R1_056.ab1   (187)   424     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BE604885Ld11P129F05P129F111R1_056.ab1   611 
  311    BE604885Ld11P129F05P129F111F1_056.ab1   124 
  315  C BE604885Ld11P129F05P129F111R1_056.ab1   297 
  355    BE604885Ld11P129F05P129F111F1_056.ab1   168 
  367  C BE604885Ld11P129F05P129F111R1_056.ab1   245 
  387    BE604885Ld11P129F05P129F111F1_056.ab1   200 
  431  C BE604885Ld11P129F05P129F111R1_056.ab1   181 
  483    BE604885Ld11P129F05P129F111F1_056.ab1   296 
  495  C BE604885Ld11P129F05P129F111R1_056.ab1   117 
  507    BE604885Ld11P129F05P129F111F1_056.ab1   320 
  539  C BE604885Ld11P129F05P129F111R1_056.ab1    73 
  543    BE604885Ld11P129F05P129F111F1_056.ab1   356 
Contig length: old 758, new 758

Contig length: old 758, new 758
New start: 0