No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:711)  425  0.65 0.22 0.22  BE604959At02P078G03P078G091F1_094.ab1      118   577 (0)  C BE604959At02P078G03P078G091R1_094.ab1   (0)   595   136 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1    BE604959At02P078G03P078G091F1_094.ab1     1 
  121  C BE604959At02P078G03P078G091R1_094.ab1   592 
  133    BE604959At02P078G03P078G091F1_094.ab1   133 
  137  C BE604959At02P078G03P078G091R1_094.ab1   576 
  156    BE604959At02P078G03P078G091F1_094.ab1   157 
  204  C BE604959At02P078G03P078G091R1_094.ab1   509 
  228    BE604959At02P078G03P078G091F1_094.ab1   229 
  232  C BE604959At02P078G03P078G091R1_094.ab1   481 
  236    BE604959At02P078G03P078G091F1_094.ab1   237 
  240  C BE604959At02P078G03P078G091R1_094.ab1   473 
  244    BE604959At02P078G03P078G091F1_094.ab1   245 
  260  C BE604959At02P078G03P078G091R1_094.ab1   453 
  264    BE604959At02P078G03P078G091F1_094.ab1   265 
  288  C BE604959At02P078G03P078G091R1_094.ab1   425 
  296    BE604959At02P078G03P078G091F1_094.ab1   297 
  316  C BE604959At02P078G03P078G091R1_094.ab1   397 
  324    BE604959At02P078G03P078G091F1_094.ab1   325 
  332  C BE604959At02P078G03P078G091R1_094.ab1   381 
  344    BE604959At02P078G03P078G091F1_094.ab1   345 
  348  C BE604959At02P078G03P078G091R1_094.ab1   365 
  360    BE604959At02P078G03P078G091F1_094.ab1   361 
  364  C BE604959At02P078G03P078G091R1_094.ab1   349 
  384    BE604959At02P078G03P078G091F1_094.ab1   385 
  388  C BE604959At02P078G03P078G091R1_094.ab1   325 
  400    BE604959At02P078G03P078G091F1_094.ab1   401 
  408  C BE604959At02P078G03P078G091R1_094.ab1   305 
  432    BE604959At02P078G03P078G091F1_094.ab1   433 
  440  C BE604959At02P078G03P078G091R1_094.ab1   273 
  460    BE604959At02P078G03P078G091F1_094.ab1   461 
  464  C BE604959At02P078G03P078G091R1_094.ab1   249 
  476    BE604959At02P078G03P078G091F1_094.ab1   477 
  480  C BE604959At02P078G03P078G091R1_094.ab1   233 
  492    BE604959At02P078G03P078G091F1_094.ab1   493 
  500  C BE604959At02P078G03P078G091R1_094.ab1   213 
  516    BE604959At02P078G03P078G091F1_094.ab1   517 
  520  C BE604959At02P078G03P078G091R1_094.ab1   193 
  532    BE604959At02P078G03P078G091F1_094.ab1   533 
  536  C BE604959At02P078G03P078G091R1_094.ab1   177 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0