No. words: 1765; after pruning: 1739


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.7 (1,1:824)  791  0.00 0.36 0.00  BE604959Ld06P078G03P078G091F1_068.ab1        1   823 (60)  C BE604959Ld06P078G03P078G091R1_068.ab1   (55)   827     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C BE604959Ld06P078G03P078G091R1_068.ab1   882 
   59    BE604959Ld06P078G03P078G091F1_068.ab1     4 
   63  C BE604959Ld06P078G03P078G091R1_068.ab1   820 
   84    BE604959Ld06P078G03P078G091F1_068.ab1    26 
  180  C BE604959Ld06P078G03P078G091R1_068.ab1   703 
  184    BE604959Ld06P078G03P078G091F1_068.ab1   126 
  720  C BE604959Ld06P078G03P078G091R1_068.ab1   163 
  856    BE604959Ld06P078G03P078G091F1_068.ab1   798 
  860  C BE604959Ld06P078G03P078G091R1_068.ab1    23 
  868    BE604959Ld06P078G03P078G091F1_068.ab1   810 
  872  C BE604959Ld06P078G03P078G091R1_068.ab1    11 
  876    BE604959Ld06P078G03P078G091F1_068.ab1   818 
Contig length: old 940, new 941

Contig length: old 941, new 941
New start: 0