No. words: 1769; after pruning: 1743


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.9 (1,1:826)  792  0.00 0.36 0.00  BE604959Ld08P078G03P078G091F1_095.ab1        4   826 (62)  C BE604959Ld08P078G03P078G091R1_095.ab1   (55)   826     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C BE604959Ld08P078G03P078G091R1_095.ab1   881 
   59    BE604959Ld08P078G03P078G091F1_095.ab1     7 
   63  C BE604959Ld08P078G03P078G091R1_095.ab1   819 
   84    BE604959Ld08P078G03P078G091F1_095.ab1    29 
  180  C BE604959Ld08P078G03P078G091R1_095.ab1   702 
  184    BE604959Ld08P078G03P078G091F1_095.ab1   129 
  500  C BE604959Ld08P078G03P078G091R1_095.ab1   382 
  856    BE604959Ld08P078G03P078G091F1_095.ab1   801 
  860  C BE604959Ld08P078G03P078G091R1_095.ab1    22 
  868    BE604959Ld08P078G03P078G091F1_095.ab1   813 
Contig length: old 942, new 943

Contig length: old 943, new 943
New start: 0