No. words: 1221; after pruning: 1181


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
 -597  -555  0 67    265     S -555- -554, E -264- 0
Fail: (1)  265    0.0 2.6 (1,1:555)  273  0.00 0.35 0.00  BE604959Ta21P137H05P078G091F1_085.ab1        4   291 (332)  C BE604959Ta21P137H05P078G091R1_085.ab1   (44)   554   266 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
265       0        1

Offset
  1       1 

Pass 4
             Gap  Score    
 -597  -555  0 67    265     S -555- -554, E -264- 0
Fail: (1)  265    0.0 2.6 (1,1:555)  273  0.00 0.35 0.00  BE604959Ta21P137H05P078G091F1_085.ab1        4   291 (332)  C BE604959Ta21P137H05P078G091R1_085.ab1   (44)   554   266 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
265       0        1

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE604959Ta21P137H05P078G091R1_085.ab1     1 
Contig length: old 598, new 598

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE604959Ta21P137H05P078G091F1_085.ab1     1 
Contig length: old 623, new 623