No. words: 1527; after pruning: 1487


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:732)  671  0.43 0.00 0.00  BE604959Tu01P078G03P078G091F1_089.ab1       34   733 (94)  C BE604959Tu01P078G03P078G091R1_089.ab1   (0)   700     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1    BE604959Tu01P078G03P078G091F1_089.ab1     1 
   37  C BE604959Tu01P078G03P078G091R1_089.ab1   697 
   41    BE604959Tu01P078G03P078G091F1_089.ab1    41 
  338  C BE604959Tu01P078G03P078G091R1_089.ab1   396 
  342    BE604959Tu01P078G03P078G091F1_089.ab1   342 
  370  C BE604959Tu01P078G03P078G091R1_089.ab1   364 
  386    BE604959Tu01P078G03P078G091F1_089.ab1   386 
  398  C BE604959Tu01P078G03P078G091R1_089.ab1   336 
  402    BE604959Tu01P078G03P078G091F1_089.ab1   402 
  414  C BE604959Tu01P078G03P078G091R1_089.ab1   320 
  430    BE604959Tu01P078G03P078G091F1_089.ab1   430 
  434  C BE604959Tu01P078G03P078G091R1_089.ab1   300 
  458    BE604959Tu01P078G03P078G091F1_089.ab1   458 
  462  C BE604959Tu01P078G03P078G091R1_089.ab1   272 
  466    BE604959Tu01P078G03P078G091F1_089.ab1   466 
  478  C BE604959Tu01P078G03P078G091R1_089.ab1   256 
  722    BE604959Tu01P078G03P078G091F1_089.ab1   722 
Contig length: old 827, new 827

Contig length: old 827, new 827
New start: 0 
S Change at: 51; seg lengths: entry 1, contig 1