No. words: 1742; after pruning: 1690


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:2)  407  0.23 0.00 0.00  BE605103Ld08P078H03P078H091R1_016.ab1        3   430 (0)    BE605103Ld08P078H03P078H091R1_013.ab1        1   428 (0) *
Merge:(0)    0    0.0 9.1 (1,1:0)  426  0.23 0.00 0.00  BE605103Ld08P078H03P078H091F1_016.ab1        1   441 (0)    BE605103Ld08P078H03P078H091F1_013.ab1        1   441 (2) *
Merge:(0)    2    0.0 5.8 (2,2:268)  245  0.00 0.00 0.37  BE605103Ld08P078H03P078H091F1_016.ab1        1   267 (174)  C BE605103Ld08P078H03P078H091R1_013.ab1   (162)   266     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 2       1        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  940 nodes

 229 str. conn. components

Path
    1  C BE605103Ld08P078H03P078H091R1_016.ab1   430 
   27  C BE605103Ld08P078H03P078H091R1_013.ab1   402 
   55  C BE605103Ld08P078H03P078H091R1_016.ab1   376 
  195  C BE605103Ld08P078H03P078H091R1_013.ab1   234 
  251  C BE605103Ld08P078H03P078H091R1_016.ab1   180 
  299    BE605103Ld08P078H03P078H091F1_013.ab1   137 
  592    BE605103Ld08P078H03P078H091F1_016.ab1   430 
  600    BE605103Ld08P078H03P078H091F1_013.ab1   438 
Contig length: old 604, new 605

Contig length: old 605, new 605
New start: 0