No. words: 1740; after pruning: 1688


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:266)  251  0.00 0.00 0.00  BE605103Ld09P078H03P078H091F1_011.ab1        1   267 (174)  C BE605103Ld09P078H03P078H091R1_011.ab1   (161)   267     1 *
Merge:(0)    1    0.0 4.8 (1,1:268)  247  0.75 0.00 0.00  BE605103Ld09P078H03P078H091F1_014.ab1        1   268 (146)  C BE605103Ld09P078H03P078H091R1_014.ab1   (188)   269     2 *
Fail: (1)  146   -5.6 -1.8 (2,2:1)  313  1.17 0.00 0.00  BE605103Ld09P078H03P078H091R1_014.ab1        2   343 (114)    BE605103Ld09P078H03P078H091R1_011.ab1        1   342 (86)  
  Worst pair: offset 0 
LLR breakdown: discreps: -12.8 (<20 part: -2.0 (#=4), >20:-10.8 (#=2); in HQ: -12.8, out HQ 0.0), match: 7.2  total: -5.6  293  1.83 0.00 0.00  BE605103Ld09P078H03P078H091F1_014.ab1        2   328 (86)    BE605103Ld09P078H03P078H091F1_011.ab1        1   327 (114)  

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-5.6       0        1

Gap   # merges  # failures
 size
 0       1        0
 1       1        0
146       0        1

Offset
  0       3 

Pass 4
             Gap  Score    
 -440  -440  161 161    394     I -322- 71
Fail: (1)  394    0.0 2.6 (2,2:252)  118  0.00 0.00 0.00  BE605103Ld09P078H03P078H091R1_014.ab1      340   457 (0)    BE605103Ld09P078H03P078H091F1_011.ab1      324   441 (0)  
 -161  -189  440 412    86     S -161- -76, E 327- 412
Fail: (1)   86   -5.6 -1.8 (2,2:1)  313  1.17 0.00 0.00  BE605103Ld09P078H03P078H091R1_014.ab1        2   343 (114)    BE605103Ld09P078H03P078H091R1_011.ab1        1   342 (86)  
  Bypassed reads: contig1: none; contig2: none
  Worst pair: offset 0 
LLR breakdown: discreps: -12.8 (<20 part: -2.0 (#=4), >20:-10.8 (#=2); in HQ: -12.8, out HQ 0.0), match: 7.2  total: -5.6  293  1.83 0.00 0.00  BE605103Ld09P078H03P078H091F1_014.ab1        2   328 (86)    BE605103Ld09P078H03P078H091F1_011.ab1        1   327 (114)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1
-5.6       0        1

Gap   # merges  # failures
 size
86       0        1
394       0        1

Offset
  0       6 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  136 nodes

 70 str. conn. components

Path
    1  C BE605103Ld09P078H03P078H091R1_011.ab1   428 
  261    BE605103Ld09P078H03P078H091F1_011.ab1   100 
  281  C BE605103Ld09P078H03P078H091R1_011.ab1   148 
  297    BE605103Ld09P078H03P078H091F1_011.ab1   136 
Contig length: old 602, new 602

Contig 1:  128 nodes

 66 str. conn. components

Path
    1  C BE605103Ld09P078H03P078H091R1_014.ab1   457 
  268    BE605103Ld09P078H03P078H091F1_014.ab1    80 
  279  C BE605103Ld09P078H03P078H091R1_014.ab1   179 
  322    BE605103Ld09P078H03P078H091F1_014.ab1   134 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0 

Contig length: old 602, new 602
New start: 0 
S Change at: 275; seg lengths: entry 1, contig 1