No. words: 1735; after pruning: 1683


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   86    0.0 7.4 (1,1:-2)  319  0.29 0.00 0.00  BE605103Ld11P078H03P078H091R1_010.ab1        1   340 (113)    BE605103Ld11P078H03P078H091R1_007.ab1        3   342 (86)  
Merge:(0)    0    0.0 5.9 (2,1:265)  249  0.00 0.00 0.00  BE605103Ld11P078H03P078H091R1_010.ab1        1   266 (187)  C BE605103Ld11P078H03P078H091F1_007.ab1   (175)   266     1 *
 -412  -439  0 188    86     S -412- -327
Fail: (1)   86    0.0 5.9 (3,1:264)  248  0.00 0.00 0.00  BE605103Ld11P078H03P078H091R1_010.ab1        1   265 (188)  C BE605103Ld11P078H03P078H091F1_010.ab1   (148)   265     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        1

Gap   # merges  # failures
 size
 0       1        0
86       1        1

Offset
  0       6 

Pass 4
             Gap  Score    
 -412  -439  0 188    86     S -412- -327
Fail: (1)   86    0.0 5.9 (3,1:264)  248  0.00 0.00 0.00  BE605103Ld11P078H03P078H091R1_010.ab1        1   265 (188)  C BE605103Ld11P078H03P078H091F1_010.ab1   (148)   265     1 *
 0  -188  412 439    323     S 0- 322
Fail: (1)  323    0.0 2.0 (3,1:13)   89  0.00 0.00 0.00  BE605103Ld11P078H03P078H091R1_007.ab1      339   428 (0)    BE605103Ld11P078H03P078H091F1_010.ab1      324   413 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
86       0        1
323       0        1

Offset
  0       4 

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 

Merge:(0)   86    0.0 5.9 (3,1:264)  248  0.00 0.00 0.00  BE605103Ld11P078H03P078H091R1_010.ab1        1   265 (188)  C BE605103Ld11P078H03P078H091F1_010.ab1   (148)   265     1 *

Contig 1:  848 nodes

 279 str. conn. components

Path
    1  C BE605103Ld11P078H03P078H091F1_007.ab1   441 
  313    BE605103Ld11P078H03P078H091R1_010.ab1   138 
Contig length: old 628, new 628

Contig length: old 628, new 628
New start: 0