No. words: 1678; after pruning: 1626


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    5    0.0 6.1 (1,1:0)  320  0.87 0.00 0.00  BE605103Ld12P078H03P078H091F1_008.ab1        1   345 (5)    BE605103Ld12P078H03P078H091F1_005.ab1        1   345 (95) *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (2,1:266)  250  0.00 0.00 0.00  BE605103Ld12P078H03P078H091F1_008.ab1        1   267 (83)  C BE605103Ld12P078H03P078H091R1_008.ab1   (201)   267     1 *
Merge:(0)   86    0.0 5.7 (3,1:258)  242  0.00 0.00 0.00  BE605103Ld12P078H03P078H091F1_005.ab1        1   259 (181)  C BE605103Ld12P078H03P078H091R1_005.ab1   (161)   259     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
86       1        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  844 nodes

 168 str. conn. components

Path
    1  C BE605103Ld12P078H03P078H091R1_005.ab1   420 
  195  C BE605103Ld12P078H03P078H091R1_008.ab1   234 
  287  C BE605103Ld12P078H03P078H091R1_005.ab1   134 
  301    BE605103Ld12P078H03P078H091F1_008.ab1   140 
  441    BE605103Ld12P078H03P078H091F1_005.ab1   280 
Contig length: old 641, new 601

Contig length: old 601, new 601
New start: 0